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1

Optogenetic Brain Interfaces

Pashaie, Ramin, Anikeeva, Polina, Jin Hyung Lee,, Prakash, Rohit, Yizhar, Ofer, Prigge, Matthias, Chander, Divya, Richner, Thomas J., Williams, Justin

Journal:

IEEE Reviews in Biomedical Engineering

Année:

2014

Langue:

english

Fichier:

PDF, 1.42 MB

english, 2014

2

Optogenetic interrogation of neurovascular coupling in the cerebral cortex of transgenic mice

Atry, Farid, Chen, Rex Chin-Hao, Pisaniello, Jane, Brodnick, Sarah, Suminski, Aaron, Novello, Joseph, Ness, Jared, Williams, Justin, Pashaie, Ramin

Journal:

Journal of Neural Engineering

Année:

2018

Langue:

english

Fichier:

PDF, 12.22 MB

english, 2018

3

An optogenetic toolbox designed for primates

Diester, Ilka, Kaufman, Matthew T, Mogri, Murtaza, Pashaie, Ramin, Goo, Werapong, Yizhar, Ofer, Ramakrishnan, Charu, Deisseroth, Karl, Shenoy, Krishna V

Journal:

Nature Neuroscience

Année:

2011

Langue:

english

Fichier:

PDF, 2.75 MB

english, 2011

4

Graphene-based carbon-layered electrode array technology for neural imaging and optogenetic applications

Park, Dong-Wook, Schendel, Amelia A., Mikael, Solomon, Brodnick, Sarah K., Richner, Thomas J., Ness, Jared P., Hayat, Mohammed R., Atry, Farid, Frye, Seth T., Pashaie, Ramin, Thongpang, Sanitta, Ma, Z

Journal:

Nature Communications

Année:

2014

Langue:

english

Fichier:

PDF, 3.40 MB

english, 2014

5

Closed-Loop Optogenetic Brain Interface

Pashaie, Ramin, Richner, Tom, Williams, Justin, Baumgartner, Ryan, Brodnick, Sarah, Azimipour, Mehdi, Eliceiri, Kevin

Journal:

IEEE Transactions on Biomedical Engineering

Année:

2015

Langue:

english

Fichier:

PDF, 3.45 MB

english, 2015

6

Wheel running for 26 weeks is associated with sustained vascular plasticity in the rat motor cortex

Stevenson, Morgan E., Kay, Jacob J.M., Atry, Farid, Wickstrom, Alexander T., Krueger, Josephine R., Pashaie, Ramin E., Swain, Rodney A.

Journal:

Behavioural Brain Research

Année:

2020

Langue:

english

Fichier:

PDF, 2.05 MB

english, 2020

7

A system identification analysis of optogenetically evoked electrocorticography and cerebral blood flow responses

Chen, Rex Chin-Hao, Atry, Farid, Richner, Thomas, Brodnick, Sarah K, Pisaniello, Jane, Ness, Jared, Suminski, Aaron, Williams, Justin C, Pashaie, Ramin

Journal:

Journal of Neural Engineering

Année:

2020

Fichier:

PDF, 30.59 MB

2020

8

Optical realization of bioinspired spiking neurons in the electron trapping material thin film

Pashaie, Ramin, Farhat, Nabil H.

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 2.67 MB

english, 2007

9

Dynamics of electron-trapping materials under blue light and near-infrared exposure: an improved model

Pashaie, Ramin, Farhat, Nabil H.

Journal:

Journal of the Optical Society of America B

Année:

2007

Langue:

english

Fichier:

PDF, 2.33 MB

english, 2007

10

Analytic model for the dynamics of electron trapping materials with applications in nonlinear optical signal processing

Pashaie, Ramin, Farhat, Nabil H.

Journal:

Journal of the Optical Society of America B

Année:

2008

Langue:

english

Fichier:

PDF, 677 KB

english, 2008

11

Realization of receptive fields with excitatory and inhibitory responses on equilibrium-state luminescence of electron trapping material

Pashaie, Ramin, Farhat, Nabil H.

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 399 KB

english, 2007

12

Single Optical Fiber Probe for Fluorescence Detection and Optogenetic Stimulation

Pashaie, Ramin, Falk, Ryan

Journal:

IEEE Transactions on Biomedical Engineering

Année:

2013

Langue:

english

Fichier:

PDF, 936 KB

english, 2013

13

Associative memory in a volume holographic medium: a new approach based on operator theory

Journal:

Journal of Optics (IOPscience)

Année:

2014

Langue:

english

Fichier:

PDF, 545 KB

english, 2014

14

[IEEE 2014 IEEE Symposium on Power Electronics and Machines for Wind and Water Applications (PEMWA) - Milwaukee, WI, USA (2014.7.24-2014.7.26)] 2014 IEEE Symposium on Power Electronics and Machines for Wind and Water Applications - Neural network based energy storage control for wind farms

Novakovic, Bora, Pashaie, Ramin, Nasiri, Adel

Année:

2014

Langue:

english

Fichier:

PDF, 1.29 MB

english, 2014

15

Optogenetic micro-electrocorticography for modulating and localizing cerebral cortex activity

Richner, Thomas J, Thongpang, Sanitta, Brodnick, Sarah K, Schendel, Amelia A, Falk, Ryan W, Krugner-Higby, Lisa A, Pashaie, Ramin, Williams, Justin C

Journal:

Journal of Neural Engineering

Année:

2014

Langue:

english

Fichier:

PDF, 887 KB

english, 2014

16

Distributed light delivery and detection via single optical fiber and tilted grating

Journal:

Journal of Modern Optics

Année:

2014

Langue:

english

Fichier:

PDF, 1.06 MB

english, 2014

17

The effect of micro-ECoG substrate footprint on the meningeal tissue response

Schendel, Amelia A, Nonte, Michael W, Vokoun, Corinne, Richner, Thomas J, Brodnick, Sarah K, Atry, Farid, Frye, Seth, Bostrom, Paige, Pashaie, Ramin, Thongpang, Sanitta, Eliceiri, Kevin W, Williams, J

Journal:

Journal of Neural Engineering

Année:

2014

Langue:

english

Fichier:

PDF, 1.97 MB

english, 2014

18

Patterned optogenetic modulation of neurovascular and metabolic signals

Richner, Thomas J, Baumgartner, Ryan, Brodnick, Sarah K, Azimipour, Mehdi, Krugner-Higby, Lisa A, Eliceiri, Kevin W, Williams, Justin C, Pashaie, Ramin

Journal:

Journal of Cerebral Blood Flow and Metabolism

Année:

2015

Langue:

english

Fichier:

PDF, 860 KB

english, 2015

19

Extraction of optical properties and prediction of light distribution in rat brain tissue

Azimipour, Mehdi, Baumgartner, Ryan, Liu, Yuming, Jacques, Steven L., Eliceiri, Kevin, Pashaie, Ramin

Journal:

Journal of Biomedical Optics

Année:

2014

Langue:

english

Fichier:

PDF, 9.06 MB

english, 2014

20

SPIE Proceedings [SPIE SPIE BiOS - San Francisco, California, USA (Saturday 21 January 2012)] Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues X - Realization of an endoscope equipped with microprojection system for optogenetics

Baumgartner, Ryan, Falk, Ryan, Pashaie, Ramin, Farkas, Daniel L., Nicolau, Dan V., Leif, Robert C.

Année:

2012

Langue:

english

Fichier:

PDF, 592 KB

english, 2012

21

Monitoring Cerebral Hemodynamics Following Optogenetic Stimulation via Optical Coherence Tomography

Atry, Farid, Frye, Seth, Richner, Thomas J., Brodnick, Sarah K., Soehartono, Alana, Williams, Justin, Pashaie, Ramin

Journal:

IEEE Transactions on Biomedical Engineering

Année:

2015

Langue:

english

Fichier:

PDF, 923 KB

english, 2015

22

Effect of blood vessels on light distribution in optogenetic stimulation of cortex

Azimipour, Mehdi, Atry, Farid, Pashaie, Ramin

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 1.16 MB

english, 2015

23

Nonlinear optical signal processing on multiwavelength sensitive materials

Azimipour, Mehdi, Pashaie, Ramin

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 395 KB

english, 2013

24

Analysis of intermediary scan-lens and tube-lens mechanisms for optical coherence tomography

Atry, Farid, Pashaie, Ramin

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 1.07 MB

english, 2016

25

SPIE Proceedings [SPIE SPIE BiOS - San Francisco, California, USA (Saturday 21 January 2012)] Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues X - Single optical fiber probe for optogenetics

Falk, Ryan, Habibi, Mohammad, Pashaie, Ramin, Farkas, Daniel L., Nicolau, Dan V., Leif, Robert C.

Année:

2012

Langue:

english

Fichier:

PDF, 2.23 MB

english, 2012

26

Calibration of digital optical phase conjugation setups based on orthonormal rectangular polynomials

Azimipour, Mehdi, Atry, Farid, Pashaie, Ramin

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 1.07 MB

english, 2016

27

SPIE Proceedings [SPIE SPIE OPTO - San Francisco, California, USA (Saturday 2 February 2013)] Optical Components and Materials X - Optical signal processing on photorefractive crystal substrate and bacteriorhodopsin thin film

Azimipour, Mehdi, Pashaie, Ramin, Digonnet, Michel J. F., Jiang, Shibin, Dries, J. Christopher

Année:

2013

Langue:

english

Fichier:

PDF, 620 KB

english, 2013

28

SPIE Proceedings [SPIE Integrated Optoelectronic Devices 2007 - San Jose, CA (Saturday 20 January 2007)] Optical Components and Materials IV - Equilibrium-state emission of electron-trapping material thin-film for applications in nonlinear-dynamics

Pashaie, Ramin, Jiang, Shibin, Digonnet, Michel J. F., Farhat, Nabil

Année:

2007

Langue:

english

Fichier:

PDF, 325 KB

english, 2007

29

SPIE Proceedings [SPIE SPIE OPTO - San Francisco, California, USA (Saturday 21 January 2012)] Physics and Simulation of Optoelectronic Devices XX - A new approach for implementation of associative memory using volume holographic materials

Habibi, Mohammad, Pashaie, Ramin, Witzigmann, Bernd, Osinski, Marek, Henneberger, Fritz, Arakawa, Yasuhiko

Année:

2012

Langue:

english

Fichier:

PDF, 288 KB

english, 2012

30

SPIE Proceedings [SPIE SPIE BiOS - San Francisco, California, United States (Saturday 13 February 2016)] Optical Interactions with Tissue and Cells XXVII - Light pattern preservation in rodent's cortical tissue during optogenetic neuro-stimulation (Conference Presentation)

Jansen, E. Duco, Azimipour, Mehdi, Atry, Farid, Pashaie, Ramin

Année:

2016

Langue:

english

Fichier:

PDF, 109 KB

english, 2016

31

OptogenSIM: a 3D Monte Carlo simulation platform for light delivery design in optogenetics

Liu, Yuming, Jacques, Steven L., Azimipour, Mehdi, Rogers, Jeremy D., Pashaie, Ramin, Eliceiri, Kevin W.

Journal:

Biomedical Optics Express

Année:

2015

Langue:

english

Fichier:

PDF, 2.55 MB

english, 2015

32

Fluorescence laminar optical tomography for brain imaging: system implementation and performance evaluation

Azimipour, Mehdi, Sheikhzadeh, Mahya, Baumgartner, Ryan, Cullen, Patrick K., Helmstetter, Fred J., Chang, Woo-Jin, Pashaie, Ramin

Journal:

Journal of Biomedical Optics

Année:

2017

Langue:

english

Fichier:

PDF, 6.90 MB

english, 2017

33

SPIE Proceedings [SPIE SPIE BiOS - San Francisco, California, United States (Saturday 28 January 2017)] Neural Imaging and Sensing - Multi-site stimulation (Conference Presentation)

Luo, Qingming, Ding, Jun, Chen, Rex Chin-Hao, Atry, Farid, Brodnick, Sarah K., Novello, Joseph, Suminski, Aaron, Pisaniello, Jane, Williams, Justin, Pashaie, Ramin

Année:

2017

Langue:

english

Fichier:

PDF, 111 KB

english, 2017

34

Design and Implementation Guidelines for a Modular Spectral-Domain Optical Coherence Tomography Scanner

Atry, Farid, De La Rosa, Israel Jacob, Rarick, Kevin R., Pashaie, Ramin

Journal:

International Journal of Optics

Année:

2018

Langue:

english

Fichier:

PDF, 3.82 MB

english, 2018

35

Angularly Resolved Deep Brain Fluorescence Imaging Using a Single Optical Fiber

De La Rosa, Israel J., Azimipour, Mehdi, Cullen, Patrick K., Helmstetter, Fred J., Pashaie, Ramin

Journal:

International Journal of Optics

Année:

2018

Langue:

english

Fichier:

PDF, 4.04 MB

english, 2018

36

Wheel running for 26 weeks is associated with sustained vascular plasticity in the rat motor cortex

Stevenson, Morgan E., Kay, Jacob J.M., Atry, Farid, Wickstrom, Alexander T., Krueger, Josephine R., Pashaie, Ramin E., Swain, Rodney A.

Journal:

Behavioural Brain Research

Année:

2020

Fichier:

PDF, 2.05 MB

2020

37

Double diversity optical coherence tomography

Journal:

Journal of Modern Optics

Année:

2020

Fichier:

PDF, 2.03 MB

2020